Recently I have been using Galaxy to run Cufflinks but I have been having problems where a job will sit waiting to run for a long time (over 12 hours), then will go yellow and start to run, and then go grey and stop running. When it stops running, it ends up sitting for days. I have tried restarting the run, but it does the same thing. It starts, then stops and says it is waiting to run.
Is anyone else having this problem and is there anything I can do to fix this? Runs that I did 2 weeks ago worked fine...
Just a note, a job that was running just reverted back to "waiting" status.
Was this the first time it was reverted? If so, then that is expected as it moves to the other cluster. If it has bounced that twice, then we would like to examine this in more detail as it is not expected.
Everything only gets reverted once that I can tell, so it should be the case that you described below.