Similar posts • Search »

• Fasta information from Cuffdiff
          Hello, Is there any way to retrieve mRNA sequence in FASTA format for all the novel ...
• Difference between mRNA, CDS, transcript and gene in annotation file
  Hi, I am new to bioinformatics and have a very basic question. In the annotation files (gff) ava...
• RIP-SEQ or RNA-SEQ
  Hello, I am new to galaxy as well as RNA seq analysis. Although, I did not perform RNA seq, I am...
• Fwd: [Galaxy-Bugs] Help With Mrna Sequences
  Begin forwarded message: Anton Nekrutenko http://nekrut.bx.psu.edu http://usegalaxy.org
• Stitch Gene Blocks From MAF for non-coding region
  Dear Galaxy, I am attempting to stitch alignments from 46MultiZ MAF for a non-coding transcript....
• how to extracts mRNA sequences with different Poly(A)tail lengths from RNA seq data
  I am trying to compare poly(A) tail length of mRNAs in cells with different condition both at glo...
• GFF Error: duplicate/invalid 'transcript'
  Hi There, I am new to the field of bioinformatics and faced some difficulty while using galaxy fo...
• Add tool to public Galaxy?
  Hello, I am working on a project to identify novel transcripts and mRNA splicing due to a deleti...
• Why isn't HTseq on usegalaxy.org?
  Hello, I'm new to the public usegalaxy.org site. I was previously using a galaxy instance hosted...
• StringTie - annotation not matching naming convention for genome sequences
  Hi, I am trying to use StringTie with a reference annotation from my history but get a warning "...
• Extract Sequences From [Gtf File] + [Genome Fasta File]
  Hi Galaxy people, I have transcripts predicted by Cufflinks that are in a gtf file. How can I ex...
• how to get fasta sequences of cufflink assembled transcripts
  hi i request you to help me in getting the fasta sequences of assembled transcripts by cufflink....
• How to count HiSeq sequences at Galaxy?
  Is there any way to count transcripts?  I am now grooming and filtering my HiSeq data.  I would l...
• How To Calculate Gc Content Of Transcripts Only Including Exons From A Gtf File
  Hi everyone, I want to calculate GC content of transcripts in the gtf file like this: chr1 Cuff...
• Transcript sequence from Cufflink information
  Good evening I have successfully used TopHat and Cufflinks. I have selected a single annotated ...
• Mapping short sequences to each transcript for a given gene
  Hi Folks Ap;ogies up front for a newbie question. I have a set of short gene targeting sequence s...
• mRNA expression Count
  Hi, I want to get mRNA expression count from RNA-Seq data. I am able to get gene expression coun...
• GTF to FASTA
  hello I have gtf files from rna seq and i want to convert them to fasta to obtain sequence of ce...