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Question: Any Plans to add HISAT?
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gravatar for jling
3.5 years ago by
jling • 70
United States
jling • 70 wrote:

Hi,

Are there any plans on adding HISAT? Given the time limitation for Tophat before job resubmission, I think HISAT would really help alleviate a lot of the queue delays since it's so much faster.

Thanks
job resubmission hisat • 1.1k views
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modified 2.9 years ago by labo14cic • 0 • written 3.5 years ago by jling • 70
0
gravatar for Bjoern Gruening
3.5 years ago by
Bjoern Gruening ♦ 5.1k
Germany
Bjoern Gruening ♦ 5.1k wrote:

Hi,

Dave did an awesome job here and the integration is nearly done. Have a look at this PR: https://github.com/galaxyproject/tools-devteam/pull/137

Cheers,

Bjoern
ADD COMMENT • link written 3.5 years ago by Bjoern Gruening ♦ 5.1k
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gravatar for jling
3.5 years ago by
jling • 70
United States
jling • 70 wrote:

Very cool, didn't know it was that close to implementation.

Looking forward to it!
ADD COMMENT • link written 3.5 years ago by jling • 70
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gravatar for labo14cic
2.9 years ago by
labo14cic • 0
Spain
labo14cic • 0 wrote:

Already HISAT2 shows in the list.
ADD COMMENT • link written 2.9 years ago by labo14cic • 0

It was only added a few days ago and it doesn't have any reference genomes available yet

ADD REPLY • link written 2.9 years ago by jling • 70
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