Question: Corrdinates from ORFs on transcripts
gravatar for m.bernt
10 weeks ago by
m.bernt40 wrote:


we have assembled human transcripts with hisat+stringtie. From these we extracted the fasta sequences and obtained the ORFs. For these ORFs we have the coordinates within the corresponding transcripts.

Now we would like to obtain the genome coordinates of the ORFs. Is there any tool for Galaxy that could help us with this task?

Best, Matthias

rna-seq galaxy • 93 views
ADD COMMENTlink modified 9 weeks ago by Jennifer Hillman Jackson25k • written 10 weeks ago by m.bernt40
gravatar for Jennifer Hillman Jackson
9 weeks ago by
United States
Jennifer Hillman Jackson25k wrote:


These ORF fasta sequences can be mapped back to the reference genome to obtain the coordinates.

Thanks! Jen, Galaxy team

ADD COMMENTlink written 9 weeks ago by Jennifer Hillman Jackson25k
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