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• Tool error: Remote job server indicated a problem running or monitoring this job.
  Hi, I'm trying to use Cufflinks and TopHat several times since last Friday, Feb. 24th. However, ...
• Error in running the RNA-Seq workflow
  I am trying to run workflow on one set of samples (RNA-Seq experiment. But after entering all the...
• Error submitting job on a local Galaxy: Cuffquant version 2.2.2.1
  Hello. I am a new (and only) administrator for a private Galaxy installation that has been in use...
• Problem with running tophat2
  Hello everyone, this is the first time i'm trying to run tophat2 on a computer cluster, which a...
• Please give me help to solve this problem about cuffdiff, thank you very much!
  Hello, Excuse me, I want to seek help. Recent I am using galaxy workflow to analysi...
• Tophat errors with alignment summary and insertions data
  Hello, I have encountered a problem after using Tophat. I started off with fasta file of my geno...
• Tophat fails again and again
  Hi Jen, I have some problems with one of the dataset and tophat fails again and again. Will you p...
• Tophat/Cuff Parameters
  Hello, Yes, this is correct, not all parameters can be adjusted in the UI. Many can, especially ...
• Problems to access and refresh Galaxy pages these days
  Dear Galaxy team, Recently (about two weeks), there are problems to access the galaxy webpage, s...
• tophat tool stalled
  Hi there,  I was a bit impatient earlier in the day and terminated tophat on the main galaxy too...
• TopHat error: "An error occurred setting the metadata for this dataset"
  Hi, I attempted to use TopHat today and got an error message which said "An error occurred setti...
• Can't map my pairend samples with TopHat after grooming.
  Hello everyone, I need to do TopHat my groomed data files, which are pair-ended. I groomed my ...
• TopHat "failure preparing job"
  Hello everybody, I 'm trying to use TopHat Gapped-read mapper for RNA-seq data on Galaxy. But I ...
• TopHat Error After Updating Galaxy
  Hello! After updating Galaxy I have some problems with running TopHat because permanently appear...
• Error for TopHat
  Hello, I could not use TopHat for RNA-seq. I received error messages writing server error many t...