Question: bwa failed to generate index
gravatar for Student-T
3.6 years ago by
Student-T0 wrote:

I don't know why. I have a very small custom genome and a small data-set for paired reads. I tried bwa Galaxy, but....

The alignment failed.
Error aligning sequence. [bwa_aln] 17bp reads: max_diff = 2
[bwa_aln] 38bp reads: max_diff = 3
[bwa_aln] 64bp reads: max_diff = 4
[bwa_aln] 93bp reads: max_diff = 5
[bwa_aln] 124bp reads: max_diff = 6
[bwa_aln] 157bp reads: max_diff = 7
[bwa_aln] 190bp reads: max_diff = 8
[bwa_aln] 225bp reads: max_diff = 9
[bwt_restore_bwt] fail to open file '/mnt/galaxy/files/067/dataset_67441.dat.bwt'. Abort!
Aborted (core dumped)

Anybody knows why?

bwa alignment • 756 views
ADD COMMENTlink modified 3.6 years ago by Jennifer Hillman Jackson25k • written 3.6 years ago by Student-T0
gravatar for Jennifer Hillman Jackson
3.6 years ago by
United States
Jennifer Hillman Jackson25k wrote:


This is occuring at the public Main Galaxy server at Please try the job again now and let us know if the error is persistent. 

Thanks, Jen, Galaxy team

ADD COMMENTlink written 3.6 years ago by Jennifer Hillman Jackson25k
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