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Question: bwa failed to generate index
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gravatar for Student-T
3.6 years ago by
Student-T • 0
Australia
Student-T • 0 wrote:

I don't know why. I have a very small custom genome and a small data-set for paired reads. I tried bwa Galaxy, but....

The alignment failed.
Error aligning sequence. [bwa_aln] 17bp reads: max_diff = 2
[bwa_aln] 38bp reads: max_diff = 3
[bwa_aln] 64bp reads: max_diff = 4
[bwa_aln] 93bp reads: max_diff = 5
[bwa_aln] 124bp reads: max_diff = 6
[bwa_aln] 157bp reads: max_diff = 7
[bwa_aln] 190bp reads: max_diff = 8
[bwa_aln] 225bp reads: max_diff = 9
[bwt_restore_bwt] fail to open file '/mnt/galaxy/files/067/dataset_67441.dat.bwt'. Abort!
Aborted (core dumped)

Anybody knows why?
bwa alignment • 756 views
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modified 3.6 years ago by Jennifer Hillman Jackson ♦ 25k • written 3.6 years ago by Student-T • 0
0
gravatar for Jennifer Hillman Jackson
3.6 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

This is occuring at the public Main Galaxy server at http://usegalaxy.org? Please try the job again now and let us know if the error is persistent. 

Thanks, Jen, Galaxy team
ADD COMMENT • link written 3.6 years ago by Jennifer Hillman Jackson ♦ 25k
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