Question: reconstitute tool panel
1
gravatar for mlovci
3.6 years ago by
mlovci10
Brazil
mlovci10 wrote:

I did a dumb thing and deleted a directory I shouldn't have. I've repaired most of the damage but I can't figure out how to fix my tool panel.

So far, with some work I've fixed the postgresql database, and put software back where it should be. My local galaxy (running in docker based off of https://github.com/bgruening/docker-galaxy-stable) now has all my data and I'm able to see and interact with histories. If I check the admin panel under `Manage installed tool shed repositories` I'm able to see all the tools I have installed up until now and refresh their status. /galaxy-central/tool-deps has software in it. /shed_tools also has software things.

My question:

Is it somehow possible to re-create the tool panel from the tools that galaxy already knows are installed?

Which file should I be editing if I can't get this to automatically populate?

Thanks in advance!

-Mike

ADD COMMENTlink modified 3.6 years ago by Martin Čech ♦♦ 4.9k • written 3.6 years ago by mlovci10
1
gravatar for Martin Čech
3.6 years ago by
Martin Čech ♦♦ 4.9k
United States
Martin Čech ♦♦ 4.9k wrote:

The tools you installed from Tool Shed should have entry in shed_tools_conf.xml and the whole toolpanel is described in integrated_tool_panel.xml
If both of these are lost you might have to recreate them manually :/

Some more details here: How to organize list of Tools on local galaxy

ADD COMMENTlink written 3.6 years ago by Martin Čech ♦♦ 4.9k
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