Question: ATAC-Seq Analysis pipeline
1
gravatar for william.horne
2.8 years ago by
United States
william.horne10 wrote:

Hello,

Is there software available on the Galaxy to analyze my ATAC-Seq results? Any help please!

 

peaks homer atac galaxy • 4.5k views
ADD COMMENTlink modified 2.8 years ago by Jennifer Hillman Jackson23k • written 2.8 years ago by william.horne10
1
gravatar for Jennifer Hillman Jackson
2.8 years ago by
United States
Jennifer Hillman Jackson23k wrote:

Hi,

Homer is wrapped for Galaxy. 
https://toolshed.g2.bx.psu.edu/view/kevyin/homer 

You will need to use this in a local or cloud Galaxy. For other analysis, there are a few tools to pick from for comparing peak data, including conversation data (MAF alignments). Galaxy server choices: 
http://wiki.galaxyproject.org/BigPicture/Choices

For some tutorials to help get oriented, please see:
Galaxy Main: http://usegalaxy.org -> Shared Data: Published Pages/Workflows
Galaxy wiki: http://galaxyproject.org -> Learn, Train
Videos: http://vimeo.com/galaxyproject

Best, Jen, Galaxy team

ADD COMMENTlink modified 2.8 years ago • written 2.8 years ago by Jennifer Hillman Jackson23k
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