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• Updating Tools in production galaxy
  I am launching a production galaxy instance and wanted to see what is the best way to handle the ...
• Best way to export and archive histories for later use
  Hello, What's the best way to export an archive of a history for storage?  If something needs to...
• Need help with "Generate pileup" tool
  Dear, What kind of files should i use to "using reference genome" and where get it? I trying to...
• passing a token or metadata to a workflow
  Is there best practice way of passing a token or metadata to a workflow that is accessible to dow...
• Filename Extension In New Tool
  I have a tool that takes a pdb file as input. The authors of the *compiled* code require that th...
• How to find out what genomes are supported in Galaxy? (potato?)
  Does Galaxy main support any potato genome assemblies? Also, what is the best way to find out whi...
• Installing Tools from ToolShed? (some are slow some are missing dep.)
  Hi all, I'm using latest stable Galaxy Docker Build and installing some tools.... While some ins...
• Preferred Way To Make Custom Tool Accessible Though Path
  Hi, I have written a simple xml wrapper to run the UCSC *bigWigToBedGraph* tool on a custom Gala...
• difference between MPileup multi-way pileup of variants and Generate pileup from BAM dataset
  hello everobody , in my project , i have to detect the variants (SNP and indels) in my genome se...
• Microbes Data In Local Instance Of Galaxy
  Hi All, We have or local galaxy instance running which works fine. In the get data section the Mi...
• mapping sanger sequencing files
  I have over 600 ab1 files generated by sanger sequencing. they represent different splicing forms...
• HOW TO REALIGN INDELS
  Hello. I want to know what is the best tool to realign indels using galaxy. Thank you.
• Read Shuffler And Code Contributions
  Hi, I was wondering if there is a tool in Galaxy to put mate pair reads located in two files ins...
• Best Way to "clone" My Local Galaxy instance
  Hi guys, I have a local instance of development for galaxy, and I would like to know, what is th...
• adding a header to a tabular file
  Hi, I have tabular file in my history and I would like to add a header to it. What would be the b...
• Refseq and Ensembl canonical transcripts for hg38
  Hi,  Does anyone know what is the best way to download the ENSEMBL and REFSEQ canonical transcri...
• cuffdiff output to gene enrichment analysis
  Hi all, I successfully ran my RNA-seq data through the entire tuxedo suite on galaxy. I would li...
• An Idea For Sharing Tools
  Hi Everyone, I have an "I want a pony" idea that I would like to kick onto the mailing list: It...
• Extracting Number Of Reads From Bowtie Analysis
  Hello, I am new here! I am aligning Solexa files to genome using tool: NGS: Mapping: Map with Bo...
• Adding Reference genome to STAR local galaxy
  I am attempting to determine the best way to add a reference genome to STAR. Since there is no da...