Question: cufflinks-job submission failed
2
gravatar for raj_262920
2.8 years ago by
raj_26292020
Germany
raj_26292020 wrote:

Hi

I have a problem when I tried to run cufflinks. It says job submission failed, please contact galaxy team if this error persists'.

Please help !

Thanks

rna-seq cufflinks galaxy • 1.3k views
ADD COMMENTlink modified 2.8 years ago by carlos20 • written 2.8 years ago by raj_26292020
2

Hello, We can confirm the issue and will be sending out an update shortly. Thanks, Jen, Galaxy team

ADD REPLYlink written 2.8 years ago by Jennifer Hillman Jackson23k

Hello,

I am having the same issue.

Looking forward for help!

Thanks

 

 

 

ADD REPLYlink written 2.8 years ago by an5940

Hi, I too am having this problem!

ADD REPLYlink written 2.8 years ago by J.A.Heward10

I've been having this issue since yesterday, as well. 

ADD REPLYlink written 2.8 years ago by scwoll0
3
gravatar for Jennifer Hillman Jackson
2.8 years ago by
United States
Jennifer Hillman Jackson23k wrote:

Hello all,

Please refresh your Galaxy session by using the commands "ctl+shift+r". This will reload the user interface and the tool should be available. Note that this is an updated version of the tool form. If you should run into issues while using it, please submit a bug report.

This advice applies to any other tools that may seem to be behaving strangely in Main. One refresh will correct all.

Thanks all for your patience, Jen, Galaxy team

ADD COMMENTlink written 2.8 years ago by Jennifer Hillman Jackson23k

Hi Galaxy team 

Thank you for your support.

I just tried using both 0.07 and 0.06 versions but this is not working.

 

ADD REPLYlink written 2.8 years ago by an5940

Hi

I refreshed my session and tried cufflinks again. But still the same error !

Thanks

ADD REPLYlink written 2.8 years ago by raj_26292020

Hey Jennifer,

I attempted the refresh, but it is still failing to launch cufflinks. 

ADD REPLYlink written 2.8 years ago by scwoll0

There were more updates and fixes during the day today. Martin's advice about an hour ago is the current update. A refresh should not be needed any more (for any tool), and the Cufflinks issue more complicated (included a second, separate issue, now resolved).

These are updated tools, reporting issues is very much appreciated. Thanks to everyone that responded to this post! Jen, Galaxy team

ADD REPLYlink modified 2.8 years ago by Martin Čech ♦♦ 4.2k • written 2.8 years ago by Jennifer Hillman Jackson23k
2
gravatar for Martin Čech
2.8 years ago by
Martin Čech ♦♦ 4.2k
United States
Martin Čech ♦♦ 4.2k wrote:

This issue should be resolved now. Everybody please go ahead and use the tool. :)

ADD COMMENTlink modified 2.8 years ago • written 2.8 years ago by Martin Čech ♦♦ 4.2k

Thanks Galaxy team ! Everything up and working now ! :)

ADD REPLYlink written 2.8 years ago by raj_26292020
0
gravatar for carlos
2.8 years ago by
carlos20
United States
carlos20 wrote:

I'm having the same issue on a local instance of Galaxy

https://www.dropbox.com/s/5k3b6l7fk337et7/Cufflink%20Error.pdf?dl=0

I updated Galaxy by running hg pull -u  but this did not solve the issue.

 

Any other ideas ?

Thanks !

 

CL

ADD COMMENTlink written 2.8 years ago by carlos20
1

(For anyone else looking) This was resolved on IRC -- these changes are not in galaxy-dist yet, but will be soon.  They're currently only in galaxy-central and will be in -dist with the forthcoming release.

ADD REPLYlink written 2.8 years ago by Dannon Baker3.7k
0
gravatar for carlos
2.8 years ago by
carlos20
United States
carlos20 wrote:

Is there a link to know when the next release will be available?  We are still waiting to resolve our local Cufflinks issue.    Thank  you.

 

CL

ADD COMMENTlink written 2.8 years ago by carlos20

Once out the information about the new release will be posted on our twitter account (https://twitter.com/galaxyproject) and in this forum too.

ADD REPLYlink written 2.8 years ago by Martin Čech ♦♦ 4.2k
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