I am trying to run cufflinks on a dataset, but the job submission fails every time I attempt to do so no matter the perimeters. I have run cufflinks on this data prior to now, but when back and did some different trimming, but other than that it is the same dataset. I don't know if the updates today have anything to do with the issue.
The error message reads:
{
"tool_id": "toolshed.g2.bx.psu.edu/repos/devteam/cufflinks/cufflinks/0.0.6",
"tool_version": "0.0.6",
"inputs": {
"input": {
"batch": false,
"values": [
{
"id": "bbd44e69cb8906b592a299d43a1faf58",
"src": "hda"
}
]
},
"max_intron_len": "300000",
"min_isoform_fraction": "0.1",
"pre_mrna_fraction": "0.15",
"do_normalization": "No",
"reference_annotation|use_ref": "Use reference annotation",
"reference_annotation|reference_annotation_file": {
"batch": false,
"values": [
{
"id": "bbd44e69cb8906b5e6246418c3b32a6b",
"src": "hda"
}
]
},
"bias_correction|do_bias_correction": "No",
"multiread_correct": "No",
"effective_length_correction": "",
"global_model": ""
}
}
