Question: How do I associate a genome with a BAM file?
1
mike.thon • 30 wrote:
I aligned some RNA-Seq reads to a genome sequence using tophat2 and now cuffdiff complains that there are no genome sequences associated with the BAM files. The genome sequence is a fasta file that I imported into my history. If I edit the BAM file's attributes to set the genome sequence, I am only presented with a list of 'built in' genome builds. How do I set the genome sequence for these BAM files?