Question: Changing Fastq To Fastqillumina Fails
8.6 years ago by
Ryan Golhar • 80
Ryan Golhar • 80 wrote:
I've uploaded a compressed (gzip) fastq file into galaxy. The file is recognized as fastq. When I try to run the FASTQ Summary Statistics program on the uploaded file, I don't see the file listed in the drop-down box. I then tried to change the type of the file from fastq to fastqillumina and I get the following error: â TypeError: ldda_edit_info() takes exactly 6 non-keyword arguments (5 given) URL: http://genomes.umdnj.edu/galaxy/library_common/ldda_edit_info?library_ id=2234cb1fd1df4331&show_deleted=False&cntrller=library_admin&folder_i d=8b0bee1f52868c9e&use_panels=False File '/opt/galaxy_dist/eggs/WebError-0.8a- py2.6.egg/weberror/evalexception/middleware.py', line 364 in respond app_iter = self.application(environ, detect_start_response) File '/opt/galaxy_dist/eggs/Paste-1.6-py2.6.egg/paste/debug/prints.py', line 98 in __call__ environ, self.app) File '/opt/galaxy_dist/eggs/Paste-1.6-py2.6.egg/paste/wsgilib.py', line 539 in intercept_output app_iter = application(environ, replacement_start_response) File '/opt/galaxy_dist/eggs/Paste-1.6-py2.6.egg/paste/recursive.py', line 80 in __call__ return self.application(environ, start_response) File '/opt/galaxy_dist/eggs/Paste-1.6-py2.6.egg/paste/httpexceptions.py', line 632 in __call__ return self.application(environ, start_response) File '/opt/galaxy_dist/lib/galaxy/web/framework/base.py', line 125 in __call__ body = method( trans, **kwargs ) TypeError: ldda_edit_info() takes exactly 6 non-keyword arguments (5 given) -- CONFIDENTIALITY NOTICE: This email communication may contain private, confidential, or legally privileged information intended for the sole use of the designated and/or duly authorized recipient(s). If you are not the intended recipient or have received this email in error, please notify the sender immediately by email and permanently delete all copies of this email including all attachments without reading them. If you are the intended recipient, secure the contents in a manner that conforms to all applicable state and/or federal requirements related to privacy and confidentiality of such information.
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