Question: How to contact Galaxy Team re: BWA, bowtie if your genome of interest is not listed..
1
gravatar for aklegart
3.3 years ago by
aklegart10
United States
aklegart10 wrote:

I'm interested in using Galaxy for my project - while the Rhesus macaque genome is included in both BWA and bowtie mapping options - I don't see any of the available long-tailed macaque genomes (Macaca fascicularis) listed as an option.  While the tool indicates we can contact the Galaxy team about getting genomes of interest added - I couldn't find the correct contact link.  If you could direct me to the correct email that would be great!  Long-tailed macaques are the second most widely used biomedical model primate so it would be a great addition.  There should be 2-3 full genomes currently available via GenBank and gigaDB.

 

Cheers,

   Amy

ADD COMMENTlink modified 3.3 years ago by Martin Čech ♦♦ 4.6k • written 3.3 years ago by aklegart10
1
gravatar for Martin Čech
3.3 years ago by
Martin Čech ♦♦ 4.6k
United States
Martin Čech ♦♦ 4.6k wrote:

Hello Amy,

to request a genome please comment on this card: 
https://trello.com/c/mJWnAuuQ/1511-to-request-reference-genome-comment-on-this-card

You can also add and use your custom genome:
https://wiki.galaxyproject.org/Learn/CustomGenomes

ADD COMMENTlink written 3.3 years ago by Martin Čech ♦♦ 4.6k
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