I am currently using Galaxy to analyze several sets of ChIP-Seq datas, including those published and in house generated from my own sample.
When closely looking at two sets of bigWig file of TF binding data in UCSC genome browser, I surprisingly discovered that two of the transcription factors form well overlapped peaks in the promoter region of several genes.
Now I want to do a heat map ploting for genome wide enriched region in one transcription factor and take a look at that generated from another within the same genome X-axis see if it is also enriched. Ho can I do that?
Is there any other bioinformatic assay I could do to determine the extend of co-occupation of two transcription factors?
Thanks in advance for answering those questions!