Question: Problem installing Galaxy Server on Percona Database
gravatar for thomas.kiener
4.1 years ago by
European Union
thomas.kiener0 wrote:

Hi all

I want to instal the newest galaxy server on a CentOS6.5 Linux Server with an external Percona Mysql Database.
But during the installation process, the following errot occured....

File "/usr/local/galaxy/galaxy-dist/eggs/MySQL_python-1.2.3c1_5.1.41_static-py2.6-linux-x86_64-ucs4.egg/MySQLdb/", line 188, in __init__
    super(Connection, self).__init__(*args, **kwargs2)
OperationalError: (OperationalError) (2003, "Can't connect to MySQL server on '<databser_server>' (111)") None None



09:16:02 UTC - mysqld got signal 11 ;
This could be because you hit a bug. It is also possible that this binary
or one of the libraries it was linked against is corrupt, improperly built,
or misconfigured. This error can also be caused by malfunctioning hardware.
We will try our best to scrape up some info that will hopefully help
diagnose the problem, but since we have already crashed,
something is definitely wrong and this may fail.
Please help us make Percona Server better by reporting any
bugs at

It is possible that mysqld could use up to
key_buffer_size + (read_buffer_size + sort_buffer_size)*max_threads = 69183 K  bytes of memory
Hope that's ok; if not, decrease some variables in the equation.

Thread pointer: 0x36288c0
Attempting backtrace. You can use the following information to find out
where mysqld died. If you see no messages after this, something went
terribly wrong...
stack_bottom = 7fa718652d40 thread_stack 0x40000

Trying to get some variables.
Some pointers may be invalid and cause the dump to abort.
Query (7fa6dc005cb0): is an invalid pointer
Connection ID (thread ID): 2

Can you please help me?


galaxy • 936 views
ADD COMMENTlink written 4.1 years ago by thomas.kiener0
gravatar for Bjoern Gruening
4.1 years ago by
Bjoern Gruening5.1k
Bjoern Gruening5.1k wrote:

Hi Thomas,

is Percona officially supported by SQLalchemy? By any chance try to use PostgreSQL, it will save you so much time.



ADD COMMENTlink written 4.1 years ago by Bjoern Gruening5.1k
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