Question: When will stampede be accessible through galaxy main?
gravatar for Guilherme Dias
4.2 years ago by
Guilherme Dias110 wrote:

Hey guys,

I just noticed that some tools allow the user to specify the computational resources for that specific job. So i tried running a Lastz mapping selecting the Stampede cluster at TACC, instead of the Galaxy cluster. The problem is the job won't complete and an error showed up saying that the Lastz tool was not found.

Is this cluster running Galaxy's tools already? Is it much faster than Galaxy's default cluster?


cluster stampede tacc • 1.2k views
ADD COMMENTlink modified 4.2 years ago by Nate Coraor3.2k • written 4.2 years ago by Guilherme Dias110
gravatar for Nate Coraor
4.2 years ago by
Nate Coraor3.2k
United States
Nate Coraor3.2k wrote:


Stampede should be accessible now, but it looks like TACC has the partitions disabled, so jobs won't run (they will remain queued). I am not sure why this is the case, but I suspect they are sorting out some kind of system problem.

As for the errored job, could you click the bug icon to report it to us, so we can see the full stdout/stderr? Thanks.

ADD COMMENTlink written 4.2 years ago by Nate Coraor3.2k

Okay, I was able to reproduce the problem and have fixed the initial issue (lastz not found), but am still having problems getting the tool to properly finish. I'll update when this is fixed.

ADD REPLYlink written 4.2 years ago by Nate Coraor3.2k

lastz should be able to run on Stampede now. However, the regular Stampede partition is still marked "down." The development partition is up, but the walltime for that partition is 30 minutes. I am not sure what is going on with Stampede today as the development partition has been up and down multiple times, and the normal partition has remained down.

ADD REPLYlink written 4.2 years ago by Nate Coraor3.2k

Thank you Nate!

I just queued a Lastz mapping in both the Galaxy cluster and Stampede (development). Stampede already finished the job without errors and the Galaxy cluster is also working as usual (it only takes longer). Thank you very much for the attention!

ADD REPLYlink written 4.2 years ago by Guilherme Dias110
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