Question: Reference Genome for RNAseq analysis
1
gravatar for leongbry
3.8 years ago by
leongbry10
United States
leongbry10 wrote:

Hi,

 

I was hoping to use Galaxy for some RNA-seq data isolated from the cultivated tomato, but I could not find the reference genome for it under the pull-down menu.  I was curious if there was any plan to add it?  I appreciate any information you can give.

Thanks,

Bryan

rna-seq genome reference custom • 905 views
ADD COMMENTlink modified 3.8 years ago by Martin Čech ♦♦ 4.7k • written 3.8 years ago by leongbry10
2
gravatar for Martin Čech
3.8 years ago by
Martin Čech ♦♦ 4.7k
United States
Martin Čech ♦♦ 4.7k wrote:

You can add your custom reference genome. Please find the details here: https://wiki.galaxyproject.org/Support#Custom_reference_genome

ADD COMMENTlink written 3.8 years ago by Martin Čech ♦♦ 4.7k

Hi,

I can also let you know how to request new genomes for consideration. Smaller genomes are best used as Custom Genomes, as are private genomes or those that you want to use immediately, but requests for larger public genomes are possible through this Trello card: http://trello.com/c/mJWnAuuQ

That said, this genome is already been requested and is under review: http://trello.com/c/RU3V9eZR

How to use Trello with the Galaxy project: http://wiki.galaxyproject.org/Support#Galaxy_Issue_Board

Best, Jen, Galaxy team

ADD REPLYlink written 3.8 years ago by Jennifer Hillman Jackson25k
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