I'm looking at some data in Trackster and I'm a bit confused about the sense/antisense labels on my data from TopHat. It looks like a single RNA-seq read is (almost always) partially assigned to sense and partially to the antisense strand. But I assume that TopHat doesn't report a read unless it is mapped to just one strand, because that would make no sense. Any idea what I'm seeing here?
I'd attach a picture to show what I'm talking about but I can't figure out how... so any help on how to do that would also be appreciated. Why is there only an option to upload a URL?