I uploaded ~60 bed files to the public galaxy server and I want to 'Fetch Sequences' for the coordinates for all of them (each of them is independent file from others). Do I need to do click 'Fetch Sequences' for each of them. Is there any feature to apply this command to all/selected files?
You can use a simplistic workflow for that:
- create a new workflow and edit it to contain a run of the fetch sequences tool as its only step
- connect an input dataset to it and save the workflow
When you run your workflow note the little file icons next to Input Dataset. This is where you enable multiple input datasets. If you do so, Galaxy runs one job per input dataset.