Question: Tophat For Illumina - Built-In Dog Genome Mislabelled
gravatar for Court, Michael
5.1 years ago by
Court, Michael10 wrote:
Hi, I minor annoyance that I had found with the current implementation of "Tophat for Illumina (version 1.5.0)" in the public site: When you submit sequences for alignment, the dropdown list of available genomes gives 2 dog genome choices - BUT both are labeled the same - "Dog(Canis lupus familiaris): canFam2". After trial and error I found that the second (lower on the list) choice is actually "Dog(Canis lupus familiaris): canFam3.1". Hopefully this can be corrected at some point - maybe when the next release comes out from the Broad. Michael [cid:image002.png@01CEC5C0.75D35560] Michael H. Court, BVSc, PhD, Diplomate ACVA Professor and William R. Jones Endowed Chair Individualized Medicine Program Pharmacogenomics Laboratory Department of Veterinary Clinical Sciences College of Veterinary Medicine, Washington State University 100 Grimes Way, Pullman, WA 99164-6610 Office: 509-335-0817 Cell: 774-287-7082 Fax: 509-335-0880<><http:""/>
galaxy • 634 views
ADD COMMENTlink modified 5.1 years ago by Jennifer Hillman Jackson25k • written 5.1 years ago by Court, Michael10
gravatar for Jennifer Hillman Jackson
5.1 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hi Michael, Thanks for reporting this, sounds like an older, incorrect, config file is in place. And this can be fixed. I will be going into the genomes area and re-verifying current builds and other built-in data/indexes shortly. Thanks! Jen Galaxy team -- Jennifer Hillman-Jackson
ADD COMMENTlink written 5.1 years ago by Jennifer Hillman Jackson25k
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