Question: New Local Galaxy Install: Problem With Grouping -- Rpy Issue
0
Hans Vasquez-Gross • 30 wrote:
Hello All,
When running a grouping on a data set via the Join, Subtract,
Grouping
menu, I receive this error.
An error occurred running this job: *Traceback (most recent call
last):
File "/opt/Bio/galaxy_dist/tools/stats/grouping.py", line 7, in ?
from rpy import *
ImportError: No module named rpy
*I'm having the hardest time figuring out which R version with what
version
of Rpy to use. So far I've tried rpy-1.0.3, rpy2-2.0.6, with
Rpackages
2.7.2 and 2.9.1. I've gotten both rpackages to compiled with the
--enable-R-shlib option and I have put it in my $PATH. However, when
trying
to install either of they rpy packages, they complain about missing
header
file RGraphics.h, Rdevices.h, and more. Does anyone have a known
good
configuration to get this module working with galaxy? Which R package
with
which rpy version should I be using?
Thanks,
Hans Vasquez-Gross
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modified 9.3 years ago
by
Nate Coraor ♦ 3.2k
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written
9.3 years ago by
Hans Vasquez-Gross • 30
