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Question: Problem with R package for integration
0
gravatar for berengereB
2.5 years ago by
berengereB • 0
berengereB • 0 wrote:

Hi,

I integrated a R tool in Galaxy who works fine, but I added a new functionality needing the package 'mclust'. When I run the tool in Galaxy, it works, but the out file send an error. It's because when the mclust library is loaded, it normally print a citation/image :

__ ___________ __ _____________

/ |/ / ____/ / / / / / ___/_ __/

/ /|_/ / / / / / / / /__ \ / /

/ / / / /___/ /___/ /_/ /___/ // /

/_/ /_/____/_____/____//____//_/ version 5.2

Type 'citation("mclust")' for citing this R package in publications.

And it seems Galaxy doesn't really appreciate it.

Someone knows how to fix this problem ?
galaxy R • 789 views
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modified 2.5 years ago • written 2.5 years ago by berengereB • 0
2
gravatar for Hotz, Hans-Rudolf
2.5 years ago by
Hotz, Hans-Rudolf • 1.8k
Switzerland
Hotz, Hans-Rudolf • 1.8k wrote:

Hi

Have a look at this similar question: "R job in galaxy" (A: R job in galaxy )

Regards, Hans-Rudolf
ADD COMMENT • link written 2.5 years ago by Hotz, Hans-Rudolf • 1.8k
0
gravatar for berengereB
2.5 years ago by
berengereB • 0
berengereB • 0 wrote:

It works ! I thought I should change the R package while there was much simpler.

Thanks a lot
ADD COMMENT • link modified 2.5 years ago • written 2.5 years ago by berengereB • 0
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