Question: Dataset Does Not Appear In A Drop-Down Menu Of A Tool
0
gravatar for Nikolay N.
5.5 years ago by
Nikolay N.40
Nikolay N.40 wrote:
Hi, I just started using the main galaxy instance. I uploaded via FTP and imported several FASTQ files. They all appear in the list of my "saved datasets" (see attached screenshot). However, when I click on any of the tools in the left panel (e.g. "FASTQ Summary Statistics") I get in the middle panel the info for the tool but the dropdown menu listing the available FASTQ files is empty (see attached screenshot). What do I need to do to be able to perform analysis on the FASTQ files that I uploaded? many thanks, Nikolay
galaxy • 972 views
ADD COMMENTlink modified 5.5 years ago by Jennifer Hillman Jackson25k • written 5.5 years ago by Nikolay N.40
0
gravatar for Jennifer Hillman Jackson
5.5 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hello, Many tools that work with FASTQ inputs, including this one, require a dataset to be in ".fastqsanger" format. This wiki explains more about how to go from .fasta -> .fastasanger format (when necessary) and designating that format with the proper "datatype" assignment: http://wiki.galaxyproject.org/Support#Tool_doesn.27t_recognize_dataset See "Dataset special cases: FASTQ" Hopefully this helps, Jen Galaxy team -- Jennifer Hillman-Jackson Galaxy Support and Training http://galaxyproject.org
ADD COMMENTlink written 5.5 years ago by Jennifer Hillman Jackson25k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 171 users visited in the last hour