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• Genomic Coordinates To Enterz Gene Ids
  I have a list of around 3000 genomic coordinates of mouse genome and I would iike to extract gene...
• finding gene locations and known SNPs for a list of genes
  I have a list of genes for which I need to find their respective location on the chromosome and a...
• Tss List With Annotation For Hg19
  I want to extract TSS ids with correspodning location for Hg19. Once I extract such TSS coordina...
• Fw: [Genome] Genome-Wide Dataset Of Protein Location Conversion
  Hello, We have been trying to determine a method to convert ChIP-Seq coordinates into a list o...
• Chromosome Coordinates to Annotation
  Hello, If I have specific chromosome coordinates, how do I find out if this region is Exon or In...
• [Genome] Genome-Wide Dataset Of Protein Location Conversion
  Hi Dana, the way I do it, is the following: Get a list of all genes (e.g. RefSeq) using the "Ge...
• Downloading The Gene Coordinates Of The Rice Genome
  Dear Galaxy users, Does anyone know how I can download the gene coordinates for the genome build:...
• Deseq2 transcript list classification
  Hi everybody, I did RNA-seq on mouse stem cells and i got a list of differentially expressed tran...
• Mutliple UCSC gene names in RStudio Data Table
  Hi there, I am using the cummeRbund package in R Studio on my personal computer to analyze diffe...
• Getting Genome Coordinates for a List of ENSEMBL IDs
  I need to convert a list of ENSEMBL IDs from an RNA-seq dataset to UCSC mm9 genome coordinates. A...
• How To Find The Alternatively Spliced Segment Of Genes In Cuffdiff Output
  Dear All, I have run programs from Tophat to Cuffdiff of Galaxy to look for the difference in al...
• Batch conversion of ID to gene symbol
  I'm an old school molecular biologist who studies gene expression but is quite new to bio-computi...
• Questions On Cuffdiff Output And Browser Visualization
  I would really appreciate someone's input on some issues I am having with my cuffdiff output for ...
• Proximity Search
  Hi there. I am trying to find the genes that are within 10kb (in the upstream region of the gene)...