Question: Macs Failed Because Of Lambdaset Options
0
Philipe Moncuquet • 40 wrote:
Hi,
I am trying to use MACS and I get the following error when the job
fails :
Usage: macs <-t tfile> [-n name] [-g genomesize] [options]
Example: macs -t ChIP.bam -c Control.bam -f BAM -g h -n test -w
--call-subpeaks
macs: error: no such option: --lambdaset
I am not really familiar to MACS so I checked the documentation and it
seems Galaxy is rigth to complain because there is no such option as
--lambdaset (http://liulab.dfci.harvard.edu/MACS/README.html).
I went back to the xml wrapper and there is this ( <param name="lambdaset" type="text" ....)="" parameters="" that="" corresponds="" to="" the="" text="" box="" 3="" levels="" of="" regions="" around="" the="" peak="" region="" to="" calculate="" the="" maximum="" lambda="" as="" local="" lambda:="" does="" anyone="" face="" the="" same="" problem="" ?="" any="" clue="" on="" what="" i="" should="" try,="" should="" i="" modify="" the="" wrapper="" ?="" cheers,="" philippe<="" div="">
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modified 6.1 years ago
by
Jennifer Hillman Jackson ♦ 25k
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written
6.1 years ago by
Philipe Moncuquet • 40
