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• Output dataset collection is empty
  Hello everyone I'm currently developping a tool which needs as input an RData object and a varia...
• Galaxy - SGE, job terminated but failed
  Hi everyone, I come back to you with another problem  : I tried to set Galaxy to our cluster. I ...
• merge collections into single list of dataset tool
  I am getting the following error Error executing tool: 'HistoryDatasetAssociation' object has n...
• How to resolve Cufflinks Fatal error: Matched on ERROR
  Hi, I've been running some RNA-seq analysis jobs on the Galaxy test server with PapAnu2 built-in ...
• April 8, 2011 Galaxy Development News Brief
  April 8, 2011 Galaxy Development News Brief http://bitbucket.org/galaxy/galaxy- central/wiki/Fea...
• Using FreeBayes in Exome Sequencing Analysis Tutorial
  I have been attempting to work through the Exome Sequencing Analysis tutorial available on the wi...
• February 18, 2011 Galaxy Development News Brief
  February 18, 2011 Galaxy Development News Brief http://bitbucket.org/galaxy/galaxy- central/wiki...
• Cannot login or create history - 'AttributeError: 'NoneType' object has no attribute 'current_history''
  There is an installation of Galaxy on a server cluster instance. I am unable to login or create a...
• Unable to download bam index file
  I have analysed my RNA seq data using TopHat tool under the NGS- RNA seq analysis heading. After ...
• November 24, 2010 Galaxy Development News Brief
  November 24, 2010 Galaxy Development News Brief Here are the highlights of the following upgrade...
• Workflow Failure Issue with .dat Compressed Files on a Local Galaxy Instance
  Greetings, We have developed a workflow using a local galaxy server instance including the follo...
• Error running tophat2
  I have a local galaxy server that is encountering some strange issues. Previously, tophat2 was ru...
• Creating A Galaxy Tool In R - "You Must Not Use 8-Bit Bytestrings"
  Hello, I'm a galaxy newbie and running into several issues trying to adapt an R script to be a g...
• "Unable to finish job" but no errors, data seems to be there?
  Hi, I am running a local instance of galaxy on a dual-xeon chip MB with 128 GB of ram. I instal...
• Error unavailable variable in Galaxy
  I have very simple Galaxy wrapper for simple R function. The following mergefun.xml file. ...
• Local Tophat Error "OSError: [Errno 2] No such file or directory"
  I have created a local Galaxy server to run RNA analysis. I am trying to run TOPHAT on a fastasa...
• Dataset generation errors
  I got an error when running my local galaxy instance. Dataset generation errors Dataset 39: work...
• how solve this error Error executing tool: No dataset upload groups were found.
  hello  I am using new galaxy user and i integrate the  tool inside the galaxy but when i execute...