Question: Is There Web-Based Cummerbund?
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gravatar for Du, Jianguang
5.8 years ago by
Du, Jianguang370
Du, Jianguang370 wrote:
Dear All, I am going to visualize Cuffdiff outputs. I understand that CummeRbund can be used to visualize Cuffdiff outputs. However, I am not good at Linux system and feel difficult to understand CummeRbund manual. Is there web-based CummeRbund program (like Tophat and Cufflink) available for use? If web-based CummeRbund does not exist, is there other web-based program can be used to visualize Cuffdiff outputs? Thanks. Jianguang
rna-seq cuffdiff • 1.4k views
ADD COMMENTlink modified 5.8 years ago by Dave Clements ♦♦ 2.4k • written 5.8 years ago by Du, Jianguang370
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gravatar for Dave Clements
5.8 years ago by
Dave Clements ♦♦ 2.4k
United States
Dave Clements ♦♦ 2.4k wrote:
Hi Jianguang, I went to http://galaxy.psu.edu/search/web/ and searched for cummerbund. It looks like there is a cummerbund wrapper in the test Galaxy Tool Shed, but that is about it. Dave C -- <http: galaxyproject.org="" wiki="" gcc2012="">http://galaxyproject.org/ http://getgalaxy.org/ http://usegalaxy.org/ http://galaxyproject.org/wiki/
ADD COMMENTlink written 5.8 years ago by Dave Clements ♦♦ 2.4k
Hi Jianguang, I'm the author of cummeRbund wrapper in the test Galaxy Tool Shed. I never got around to quite finish it, that's why I never submitted to main. Also cummeRbund received a big update since the time I was writing this wrapper. I don't think I can recommend using the wrapper in its current state at all. In any case, even if the wrapper could help you, you would need to deploy a local or a cloud instance of Galaxy, as is not clear to me that this wrapper would make its way to Galaxy Main server any time soon. You would probably be better of by dealing with R and cummeRbund, which by the way you should be able to use in Windows. If I find the time to play with the cummeRbund Galaxy wrapper again, I'll make sure to comment about it in this list. Best, Carlos On Sat, Aug 25, 2012 at 8:09 PM, Dave Clements
ADD REPLYlink written 5.8 years ago by Carlos Borroto390
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