Question: Tophat Output Spice Junction Output
0
gravatar for i b
6.4 years ago by
i b330
i b330 wrote:
Hi, where can I find an explanation of the columns in the splice junctions output? From 7 to12 they are only numbered thanks, ib
• 1.2k views
ADD COMMENTlink modified 6.3 years ago by Jennifer Hillman Jackson25k • written 6.4 years ago by i b330
0
gravatar for Jennifer Hillman Jackson
6.3 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hello Irene, Please see: http://wiki.g2.bx.psu.edu/Learn/Datatypes#Learn.2BAC8-Datatypes.Bed The BED data format was created by UCSC: http://genome.ucsc.edu/FAQ/FAQformat.html#format1 The TopHat manual also links to the UCSC specification: http://tophat.cbcb.umd.edu/manual.html (scroll to "TopHat Output") Thanks! Jen Galaxy team -- Jennifer Jackson http://galaxyproject.org
ADD COMMENTlink written 6.3 years ago by Jennifer Hillman Jackson25k

Updated links since original posting:

BED format: https://wiki.galaxyproject.org/Learn/Datatypes#Bed

Tophat manual: https://ccb.jhu.edu/software/tophat/manual.shtml

ADD REPLYlink written 2.3 years ago by Jennifer Hillman Jackson25k
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