Question: Re: Galaxy'S Tophat 2 -Gtf Option
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Jennifer Hillman Jackson ♦ 25k wrote:
Hi Zain,
Annotations are used with Tophat2 the same way that they are with
Tophat.
Open up the full parameters on the tool form and change the option
"Use Own Junctions:" to "Yes". Here you can now supply gene models as
set related parameters.
If actually performing this operation is problematic and producing
errors, please submit a bug report, leaving inputs and outputs
undeleted, so that we can troubleshoot. The wrapper is still somewhat
new.
Hopefully this helps & have a nice weekend,
Jen
Galaxy Team
Jennifer Hillman-Jackson
http://galaxyproject.org