Question: [Fwd: Re: Randomization Etc.]
12.7 years ago by
Anton Nekrutenko ♦ 1.7k
Anton Nekrutenko ♦ 1.7k wrote:
Subject: Re: Randomization etc. Date: Wed, March 15, 2006 6:08 am To: "Anton Nekrutenko" <email@example.com> Cc: "Dan Blankenberg" <firstname.lastname@example.org> Anton, I used the randomozation tool, it seems to do exactly what I need it to do (and is faster than my script!) : thanks! Just two details: - the links to the UCSC browser are not working because of the "." in the 5th column (probably my mistake, as I put "." in the input file, because I am more used to gff format). - would it be possible to ask for several runs at the same time ? I usually generate 10 (sometimes 100) random sets to calculate the random overlap in a more robust way. Then, it would be usefull to be able to save the outputs all at once: is it possible in Galaxy? Two more general comments about galaxy: - would it be difficult to make it handle gff format? - would it be difficult to make it handle ENCODE coordinates (and add a tool to do the encode2chr conversion if needed ?). France.
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