Question: [Fwd: Re: Randomization Etc.]
0
Anton Nekrutenko ♦ 1.7k wrote:
Subject: Re: Randomization etc.
Date: Wed, March 15, 2006 6:08 am
To: "Anton Nekrutenko" <anton@bx.psu.edu>
Cc: "Dan Blankenberg" <djb396@psu.edu>
Anton,
I used the randomozation tool, it seems to do exactly what I need it
to
do (and is faster than my script!) : thanks!
Just two details:
- the links to the UCSC browser are not working because of the "." in
the 5th column (probably my mistake, as I put "." in the input file,
because I am more used to gff format).
- would it be possible to ask for several runs at the same time ? I
usually generate 10 (sometimes 100) random sets to calculate the
random
overlap in a more robust way. Then, it would be usefull to be able to
save the outputs all at once: is it possible in Galaxy?
Two more general comments about galaxy:
- would it be difficult to make it handle gff format?
- would it be difficult to make it handle ENCODE coordinates (and add
a
tool to do the encode2chr conversion if needed ?).
France.