Question: Question About Extracting Information From Ceas Run Results
gravatar for shamsher jagat
6.5 years ago by
United States
shamsher jagat590 wrote:
I have run a ChIPseq work flow in galaxy, At teh end I ran CEAS: Enrichment on chromosome and annotation (version 1.0.0) to annotate the peaks which gave me a pdf file shoiwng distribution of peaks across genome with pie chart as well as well as histogram. It shows that ~5% of my peaks in 5UTR regions and other 3 % in 3' UTR 63 % exon and so on. Is there a way that I can have list of genes/ refrence ids which arein 5'UTR /3'UTR. I tried all tools in Galaxy but could not find it. There should be some way to extract these summarized results in details. Any one has a suggestion please? Thanks Kanwar
galaxy • 1.0k views
ADD COMMENTlink modified 6.5 years ago by Jennifer Hillman Jackson25k • written 6.5 years ago by shamsher jagat590
gravatar for Jennifer Hillman Jackson
6.5 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hello, It sounds as if you are using the Cistrome hosted Galaxy instance? If so, it would be best to contact them directly to discuss the tools/wrappers developed by their group. This is the primary web site: A help email is on the Cistrome Galaxy's login page. Good luck with your project, Jen Galaxy team -- Jennifer Jackson
ADD COMMENTlink written 6.5 years ago by Jennifer Hillman Jackson25k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 168 users visited in the last hour