Question: Maq Consensus Calling Changes Quality Score Of The Read?
0
Antony Jose • 70 wrote:
Hi,
We used the generate pileup tool with consensus base calling option
using
Maq. In the output, the quality scores of the bases were changed. For
example if the input score of bases in the SAM file were 'IIJIH'. They
were
changed to '22321'. Is this a glitch or is this expected? Thank you.
Antony