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Question: Convert Sam To Bigwig
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gravatar for Steve Taylor
6.8 years ago by
Steve Taylor • 240
Steve Taylor • 240 wrote:
Hi, What is the 'official' method of converting a BAM file to a bigwig on the public server? I saw this post: http://gmod.827538.n3.nabble.com/SAM-to-bigbed-td3059499.html but it seems a bit long winded given the commonness of the operation. On our local galaxy we installed from the Tool Shed: BAM to BigWig Calculates coverage from a BAM alignment file Which seems the obvious choice to make available. Thanks, Steve
gmod • 1.9k views
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modified 6.8 years ago by Jennifer Hillman Jackson ♦ 25k • written 6.8 years ago by Steve Taylor • 240
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gravatar for Jennifer Hillman Jackson
6.8 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:
Hi Stephen, The options in the prior post are still current for the Galaxy main server, however a direct method is something the team would like to consider. I have opened a ticket a bitbucket to track progress: http://bitbucket.org/galaxy/galaxy-central/issue/727/add-a-tool-to-do- bam-to-bigwig-to-galaxy Thanks for bringing up this topic again, it is a great idea, Best, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/wiki/Support
ADD COMMENT • link written 6.8 years ago by Jennifer Hillman Jackson ♦ 25k
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