Similar posts • Search »

• Add A Tool
  Hi, Currently, my tool only print out the result on screen. When I add it into galaxy I can't se...
• slow response, problems with public servers?
  I lunched one cuffdiff two days ago and I haven' t any result. Is a problem with my files or is i...
• Need help with "Tophat for Illumina" tool
  Dear All, Hello amazing Galaxy team members  now i have 14 manipulated fastq files 7 forward an...
• MetaPhIan2 does not produce results, while MetaPhIan does
  I am trying to classify a fastq read file with MetaPhIan2 When I run MetaPhIan2, the result is 10...
• Finding gene names from TopHat results.
  Hello, I am trying a build a workflow for RNA-Seq analysis and I want to verify my methods via co...
• Upload Problem
  Hi, I am trying to upload three files containing illumina data I would like to analyze using Gala...
• Samtool cant read .bed file
  hello i am using SoftSearch tool that tool execute by command prompt and result will display in ...
• bam to fasta
  Hello, I am very new to dealing with NGS data.  Have followed the instructions on how to get pai...
• Each sample as a condition? - cuffdiff
  Hello everyone, I've been having doubts about running each sample as a condition to get the FPKM...
• Bedtools Error
  Hello! I'm using BedTools on the main Galaxy server. I try to use multiinter function to compare...
• Feature Request: Multiple Downloads
  Hi I have a feature request for Galaxy histories: Is it possible to add 'Downloads' to the 'Ope...
• DeSeq Output results file: only one log2(FC) column but 4 treatments?
  Hi, I'm trying to analyse RNAseq data from 4 samples (control, treatment A, treatment B, treatme...
• 'Sampling' Bam or BigWig files?
  I am involved in an RNAseq project in which mutliple tissues of an organism are being analysed. N...
• Can't uncheck 'Strand Column' box in attributes of interval file and save
  Hello, I have an interval file uploaded to one of my galaxy histories. This file does not contain...
• Merge sam files
  I merged 3 data bases resulting in a new one with different size from the one shown in a demonstr...
• chip-seq analysis using galaxy
  For paired-end analysis, why do i see Chip-Seq Tag file 1 and 2. ? Both forward and Reverse reads...
• overflow storage allowance
  Dear Admin, I once had too many big files in the current history but I have made efforts to dele...
• Trinity assembly multiple files
  Dear Galaxy team, I am trying to assemble 12 paired reads at the same time using Trinity on Gala...
• Having trouble viewing mpileup
  I have generated an mpileup using one bam file, just wondering what is the best way to view this?...