Question: Fixed Parts Inside Workflows
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Saadeh, Heba • 10 wrote:
Dear All,
I used to work with galaxy web site gladly, until I need to apply one
workflow with (tens of join operations) on tens of datasets.
so the problem is that if I need to run the workflow, each time I need
to indicate the input datasets for each join operation and that is not
interesting at all, and very time consuming. "although they are the
same for each input file, in theory what I need to change is only the
main input file, and leave the other files of the join operations the
same, sound easy :)".
I have read the comments for the "Workflows & Multiple datasets" post,
on "how to run a workflow for multiple input files", and its now only
working on galaxy-central, which I downloaded and used and it works
fine and will solve one side of my problem the remaining will be with
the fixed part inside the workflow.
One last comment: the folder uploading functionality in galaxy-central
is not working properly with me, the process continue until running
the "uploading commands" but the files are all with 0 size, the same
process on galaxy-dist works well...
Much appreciated,
heba
Heba Saadeh
Ph.D. Student
Dept. of Medical and Molecular Genetics,
Medicine School,
King's College London,
Guy's Hospital, 8th floor Tower Wing,
London, SE1 9RT.
Office: +44(0)20 7188 3715
________________________________________
To: Dannon Baker
Cc: galaxy-user@lists.bx.psu.edu
Subject: Re: [galaxy-user] Workflows & Multiple datasets
I already tested and it's working like a charm.
Thank you very much Dannon.
-Adhemar
2011/12/19 Dannon Baker
<dannonbaker@me.com<mailto:dannonbaker@me.com>>
Ahh, I should have specified, that changeset is in the galaxy-central
repository and has not been moved to galaxy-dist yet. I think we're
testing a few more things, but this should happen in the near future,
at which point you could simply update from galaxy-dist as usual, or
you could pull directly from galaxy-central right now if you'd like.
-Dannon
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modified 6.9 years ago
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Jennifer Hillman Jackson ♦ 25k
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6.9 years ago by
Saadeh, Heba • 10
