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Question: Lastz Very Slow
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gravatar for Andrew South
7.0 years ago by
Andrew South • 50
Andrew South • 50 wrote:
Hi - is there a reason Lastz is very slow right now? I am mapping 2-3,000, reads against a single, 11Kb, sequence and find that jobs are either returning an error or taking 16-24hrs to get done. This time frame was more like 30 minutes two weeks ago. Is there a way to speed this up? Thanks in advance for any help. Andy ************************************************************ Please consider the environment. Do you really need to print this email? The University of Dundee is a registered Scottish charity, No: SC015096
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modified 7.0 years ago by Bob Harris • 190 • written 7.0 years ago by Andrew South • 50
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gravatar for Bob Harris
7.0 years ago by
Bob Harris • 190
United States
Bob Harris • 190 wrote:
Howdy, Andrew, One possibility is that there are more jobs on the cluster. I'm not familiar enough with the galaxy interface to know if there's an easy way to tell how much time the job sits on the cluster's queue waiting and how much time the job is actually running. Assuming there's no cluster difference, are the data conditions similar between what you are mapping now vs two weeks ago? I.e. number and length of reads, size of reference sequence, divergence, repeat content? Bob H
ADD COMMENT • link written 7.0 years ago by Bob Harris • 190
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