Question: Ceas In Galaxy
0
gravatar for shamsher jagat
6.6 years ago by
United States
shamsher jagat590 wrote:
Is there an option of running CEAS tool in Galaxy I want to annotate selected enriched regions of ChIP seq data with gene names etc? Thanks
galaxy • 1.6k views
ADD COMMENTlink modified 6.6 years ago by Jennifer Hillman Jackson25k • written 6.6 years ago by shamsher jagat590
0
gravatar for Jennifer Hillman Jackson
6.6 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hello, This particular tool group from is not incorporated, but many similar components exist as tools in Galaxy. In particular, the "Operate on Genomic Intervals -> Profile Annotations for a set of genomic intervals" tool may be useful. If not, then importing a gene track (UCSC, ENSEMBL, etc.) and using the other operations in this tool group can bring together annotation features. Hopefully this gives some options for your project, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/wiki/Support
ADD COMMENTlink written 6.6 years ago by Jennifer Hillman Jackson25k
Cistrome (instance of GALAXY) has CEAS included. Ian ________________________________________ To: shamsher jagat Cc: galaxy-user@bx.psu.edu Subject: Re: [galaxy-user] CEAS in Galaxy Hello, This particular tool group from is not incorporated, but many similar components exist as tools in Galaxy. In particular, the "Operate on Genomic Intervals -> Profile Annotations for a set of genomic intervals" tool may be useful. If not, then importing a gene track (UCSC, ENSEMBL, etc.) and using the other operations in this tool group can bring together annotation features. Hopefully this gives some options for your project, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/wiki/Support ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
ADD REPLYlink written 6.6 years ago by Ian Donaldson120
Thank you, Ian! Shamsher, here is the link to the project: http://cistrome.org/ This is another instance of Galaxy, so a new registration/login will be required if you do not already have one for this site. http://galaxyproject.org/wiki/Public%20Galaxy%20Servers Great! Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/wiki/Support
ADD REPLYlink written 6.6 years ago by Jennifer Hillman Jackson25k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 111 users visited in the last hour