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Question: Importing Existing Data Into Galaxy
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gravatar for Oren Livne
7.1 years ago by
Oren Livne • 130
Oren Livne • 130 wrote:
Dear All, We have a large collection of large data files on our shared file system. We would like to make a subset of them available to a galaxy user session (based on user privileges; different subsets for different users). We want to leave files in their original locations and point galaxy to their paths without copying them. What is the best option for implementing this bridge? Remote data source/data library uploaded on the fly/other? Thanks, Oren
galaxy • 833 views
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modified 7.1 years ago by Greg Von Kuster ♦ 810 • written 7.1 years ago by Oren Livne • 130
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gravatar for Greg Von Kuster
7.1 years ago by
Greg Von Kuster ♦ 810
Penn State University
Greg Von Kuster ♦ 810 wrote:
Oren, The best way to do this would be to use galaxy data libraries, uploading files from file system paths and not copying the files into the Galaxy file location. The following provides all of the details about data libraries: http://wiki.g2.bx.psu.edu/Admin/Data%20Libraries/Libraries The following provides specific details about the various options for uploading files to data libraries. http://wiki.g2.bx.psu.edu/Admin/Data%20Libraries/Uploading%20Library%2 0Files Let us know if you encounter any issues. Greg Von Kuster Greg Von Kuster Galaxy Development Team greg@bx.psu.edu
ADD COMMENT • link written 7.1 years ago by Greg Von Kuster ♦ 810
Dear Greg, Thanks so much, this helps a lot. I created a public data library, but it is not listed in the list of libraries on the left pane in "Analyze Data". How can I access it and use its files in workflows? Oren
ADD REPLY • link written 7.1 years ago by Oren Livne • 130
Dear All How can I de-subscribe from the mailing list? Any help would be appreciated Kind Regards M. J
ADD REPLY • link written 7.1 years ago by Mahjoubeh Jalali • 10
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gravatar for Greg Von Kuster
7.1 years ago by
Greg Von Kuster ♦ 810
Penn State University
Greg Von Kuster ♦ 810 wrote:
Data libraries are accessible from the "Shared Data" pop-up menu in the top Galaxy menu bar. Greg Von Kuster Galaxy Development Team greg@bx.psu.edu
ADD COMMENT • link written 7.1 years ago by Greg Von Kuster ♦ 810
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