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• Macs
  To add to my post, I reread the macs documentation and it seems that the fdr is calculated based ...
• Macs
  while using MSCS tool from Galaxy I get following mesg. with BED file: "Treatment tags and Contr...
• Problems with MACS peak calling--FDRs of 100%
  Hello, I am having some issues with MACS peak calling. I have 5 files in my ChIP-Seq dataset (in...
• p-value and FDR
  Hi  How would we explain the diff expression of a gene if it has a p-value and FDR absolutely eq...
• Estimated Fragment Lenghth/Fdr
  Hi List, Could someone explain the Estimated Fragment length? How is it used in Peak detection? ...
• Weird Peak calling results
  Hi Everyone, I need help with Galaxy-Macs' Peak Calling tool. Using my ChIP-Seq data (Experimen...
• Macs Input Format
  Hi, What format does MACS take as input within Galaxy? Thanks, Steve
• MACS does not work!
  galaxy macs does not work! Is the macs is the newest one? sometimes, galaxy cistrome can  not up...
• Macs Failed Because Of Lambdaset Options
  Hi, I am trying to use MACS and I get the following error when the job fails : Usage: macs <...
• Question About Sicer Out Put
  I used SICR to call peaks and have following out put files: 1. test.1removed bed 2. control1 r...
• MACS output files
  Hi again! Could you please explain me the MACS output files and what could I do with them? I am p...
• Macs14 With Galaxy
  Hi, Has anyone tried configuring latest version of macs with local Galaxy server ? Regards Hersh
• Peak-Calling With Macs From .Bowtie File
  Hi, I have ChIP-seq alignment files in .bowtie format and would like to perform peak-calling usi...
• Macs- Duplicate Reads Removal
  Hi, Does MACS remove duplicate reads automatically during the peak calling? I'm running controls...
• unable to load bed files on Mac OC
  I cant load bed file on my Mac though it is quickely done on other computers. How can I troublesh...
• What kind of format does MACS run?
  I download a file on the Gene Expression Omnibus that is in "tar." format, how could I make it ru...
• MACS tool version?
  Hi there, I am very new to the Galaxy. So, my question is probably very obvious: what is the cur...
• Need help with "MACS" tool
  Hi everyone, I don't quite understand the meaning of the parameters of this program.  1. What i...