Question: Customize Annotated Refgenome In Galaxy
gravatar for Anton Nekrutenko
7.2 years ago by
Penn State
Anton Nekrutenko1.7k wrote:
Qiang: I'm reposting this question to the galaxy-user mailing list. Thanks! anton
galaxy • 653 views
ADD COMMENTlink modified 7.2 years ago by Jennifer Hillman Jackson25k • written 7.2 years ago by Anton Nekrutenko1.7k
gravatar for Jennifer Hillman Jackson
7.2 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hello Qiang, The best solution is to use the fasta version of the reference genome when running the Galaxy analysis tools and then link back in the annotation as needed using the tool "Join, Subtract and Group -> Column Join". This would require you to covert/load the genbank .gb data in tabular format and possibly to use some of the tools in "Text Manipulation". Galaxy currently does not have a genbank .gb file converter, but a quick web search brings up several options for you to choose from. We hope this helps to get you started, Best, Jen Galaxy team -- Jennifer Jackson
ADD COMMENTlink written 7.2 years ago by Jennifer Hillman Jackson25k
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