Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: Loading Fasq.Gz Files Using Ftp
0
gravatar for Peng, Tao
7.3 years ago by
Peng, Tao • 170
Peng, Tao • 170 wrote:
Hi I am NEW to RNA-seq data and galaxy programs. When I try to up-load the RNA-seq data using FileZilla using my desktop PC, each file (about350 MB) takes about 1 hour to up-load. Realizing I have 4 samples, each sample has 9 fasq.gz files, each file is about 350 GB, I really need some advice how to make this up-load work. Thanks, Tao tpeng@fhcrc.org
galaxy • 807 views
ADD COMMENT • link •
modified 7.3 years ago by Jennifer Hillman Jackson ♦ 25k • written 7.3 years ago by Peng, Tao • 170
0
gravatar for Jennifer Hillman Jackson
7.3 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:
Hello Tao, It seems there has been a misunderstanding. Originally in other communications, your data was explained to be "4 samples with 2.4 GB of seq data per sample". If your 4 samples are actually a set of files with a total size of 350GB each (350GB x 4), then combined this would exceed the maximum quota of 50G per file/200G per history at the public Galaxy instance at http://usegalaxy.org. The option for this much data is to run either a local or cloud install. Help can be found at: http://getgalaxy.org http://galaxyproject.org/Admin/Cloud Questions related to local or cloud installations can be sent to the galaxy-dev@bx.psu.edu mailing list. Other users on this list may also have advice to offer about working with very large datasets. Best wishes for your project, Jen Galaxy team -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/Support
ADD COMMENT • link written 7.3 years ago by Jennifer Hillman Jackson ♦ 25k
Hi jen, have 4 biological samples, the RNA-seq data for each sample have 8 to 9 fasq.gz files with each file about 350 MB. So this is within the limit by public galaxy. Tao To: Peng, Tao Cc: galaxy-user@bx.psu.edu Subject: Re: [galaxy-user] loading fasq.gz files using FTP Hello Tao, It seems there has been a misunderstanding. Originally in other communications, your data was explained to be "4 samples with 2.4 GB of seq data per sample". If your 4 samples are actually a set of files with a total size of 350GB each (350GB x 4), then combined this would exceed the maximum quota of 50G per file/200G per history at the public Galaxy instance at http://usegalaxy.org. The option for this much data is to run either a local or cloud install. Help can be found at: http://getgalaxy.org http://galaxyproject.org/Admin/Cloud Questions related to local or cloud installations can be sent to the galaxy-dev@bx.psu.edu mailing list. Other users on this list may also have advice to offer about working with very large datasets. Best wishes for your project, Jen Galaxy team work. -- Jennifer Jackson http://usegalaxy.org http://galaxyproject.org/Support
ADD REPLY • link written 7.3 years ago by Peng, Tao • 170
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 182 users visited in the last hour