Question: Galaxy 18.09 does not work with planemo (0.55.0)
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david.christiany • 10 wrote:
Hi,
I was using planemo with a git clone of galaxy 18.05 and everything was working fine.
I tried to upgrade to galaxy 18.09, first with :
$ git fetch origin && git checkout release_18.09 && git pull --ff-only origin release_18.09
and then with a new (and maybe cleaner) copy :
$ git clone -b release_18.09 https://github.com/galaxyproject/galaxy.git
When I run planemo on this new galaxy 18.09, all I got is a blank page on my web browser (firefox)
I got error from planemo :
.planemo/gx_venv/local/lib/python2.7/site-packages/sqlalchemy/sql/sqltypes.py:603: SAWarning: Dialect sqlite+pysqlite does *not* support Decimal objects natively, and SQLAlchemy must convert fromfloating point - rounding errors and other issues may occur. Please consider storing Decimal numbers as strings or integers on this platform for lossless storage.
'storage.' % dialect.name, dialect.driver))
I ran run.sh in the galaxy (18.09) folder to see if it can unlock the situation but it does not. I got another error :
Cannot uninstall 'certifi'. It is a distutils installed project and thus we cannot accurately determine which files belong to it which would lead to only a partial uninstall.
I don't know if planemo can't handle the last version of galaxy yet or if it is an installation problem.
Does anyone had the same issue ?
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modified 5 days ago
by
Bjoern Gruening ♦ 5.1k
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written
7 days ago by
david.christiany • 10
