We have been trying to install Galaxy on VM with CentOS before installing in server, and unlike my previous experience with Ubuntu, we found some problems on apparently connectivity to https. When starting galaxy, the .env had problem to retrieve and install yarn packages, since it was unable to access the 'https://github.com/sorich87/bootstrap-tour.git/'. Problematic output follows.
sh run.sh ..... You are using pip version 9.0.1, however version 18.0 is available. You should consider upgrading via the 'pip install --upgrade pip' command. galaxy.dependencies.optional: no config file found The Galaxy client has not yet been built and will be built now. Installing node into /home/julloa/galaxy-master/.venv with nodeenv. * Install prebuilt node (9.11.1) ..... done. * Appending data to /home/julloa/galaxy-master/.venv/bin/activate * Appending data to /home/julloa/galaxy-master/.venv/bin/activate.fish Installing yarn into /home/julloa/galaxy-master/.venv with npm. /home/julloa/galaxy-master/.venv/bin/yarn -> /home/julloa/galaxy-master/.venv/lib/node_modules/yarn/bin/yarn.js /home/julloa/galaxy-master/.venv/bin/yarnpkg -> /home/julloa/galaxy-master/.venv/lib/node_modules/yarn/bin/yarn.js + firstname.lastname@example.org added 1 package in 1.397s cd client && yarn install --network-timeout 120000 --check-files yarn install v1.9.4 [1/4] Resolving packages... [2/4] Fetching packages... error Command failed. Exit code: 128 Command: git Arguments: ls-remote --tags --heads https://github.com/sorich87/bootstrap-tour.git Directory: /home/julloa/galaxy-master/client Output: fatal: unable to access 'https://github.com/sorich87/bootstrap-tour.git/': Peer reports incompatible or unsupported protocol version. info Visit https://yarnpkg.com/en/docs/cli/install for documentation about this command. make: *** [node-deps] Error 1 ERROR: Galaxy client build failed. See ./client/README.md for more information, including how to get help.
Also: I tried installing the yarn directly in client and comes similar issue, also any suggestion to upgrade the pip? I did but to default lib, I couldn't in the .env
Thanks for the support!