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• MACS returns an error
  Hi again! I am trying to run MACS on my treatment and control, but it comes back with an error. I...
• Tophat in usegalaxy
  Hi, I'm running galaxy in usegalaxy, I got these error. Previously I was running tophat in ami (...
• error long spanning reads Malformed
  Hi, I have ran the Tophat 2.08 version and I have obtained this "result".log [2014-09-10 09:47:...
• Erorr with runing cuffmerge
  Hello I am doing RNA-seq analysis, I am trying to run cuffmerge for assembled transcripts files...
• Manage_Db: Mysql Error 1059
  Hi, I upgraded today from a Galaxy release from about a month ago and got this error when I ran ...
• Tophat Error: segment-based junction search failed with err =1
  Hi Everybody, I have this error message when I try to do Top Hat algorithm on my Groomer FASTQ f...
• Cuffmerge/Cuffcompare Duplicate GFF ID errors
  On the public galaxy server I have run  TOPHAT with mm10 and then Cufflinks v2.1.1 (Galaxy v0.0.7...
• Cuffmerge "Matched on error" - Check for problematic input format
  Hi, This is my first time analyzing RNASeq data. I mapped and aligned my reads using tophat and...
• Cuffmerge Error: Duplicate Gff Id Encountered
  Hello, I was doing a RNA analyse and I wished to compare the transcription and expression of two ...
• Tophat Error
  Hello, I was trying to run tophat v1.3.2 on SOLID data and I have this erro...
• Re: Help!!!!!! With Galaxy Cloud!!!!!
  Hi Enis, With the exception of the BAM file (4.1Gb) I have been able to download everything that...
• galaxy setting problem on network
  I have problem on the connection from another computer on my galaxy server   alaxy.sample_trac...
• Trouble uploading data to LEfSe
  Is there a problem with Galaxy at the moment? I haven't been able to upload data to analyse with ...
• Galaxy cloud instance won't initialize
  Hi Galaxy Team,   I am in desperate need of using the cloud so that I can analyze by rather lar...
• Error In Tophat
  This is the error I am getting while running Tophat. What's causing this? I have the default hg19...
• RSEM "Unable to finish job" but output data seem to be OK
  Hi there I am working on a local instance of Galaxy constructed from the docker image galaxy-sta...
• The October 2018 Galactic News!
  Hello All, The [October 2018 Galactic News][1] highlights what’s going on in the Galaxy this mo...
• Tophat Error
  Hi, JUst running a TopHat job which returned the following error: Executing: /gpfs/cluster/isys...
• Tophat Error
  Hi, JUst running a TopHat job which returned the following error: Executing: /gpfs/cluster/isys...