Question: Error In Tophat
0
Sachit Adhikari • 320 wrote:
This is the error I am getting while running Tophat. What's causing
this? I
have the default hg19 index files.
Error in tophat:
[Tue Dec 18 10:08:33 2012] Beginning TopHat run (v1.3.3)
[Tue Dec 18 10:08:33 2012] Preparing output location ./tophat_out/
[Tue Dec 18 10:08:33 2012] Checking for Bowtie index files
Error: Could not find Bowtie index files
/opt/galaxyprod/galaxy-dist/data/hg19/hg19,/data/bowtie2-2.0.2/hg19.*
TopHat v1.3.3
TopHat v1.3.3
tophat -p 4
/opt/galaxyprod/galaxy-dist/data/hg19/hg19,/data/bowtie2-2.0.2/hg19
/opt/galaxyprod/galaxy-dist/database/files/000/dataset_45.dat