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Question: Unable to view data of converted srr file into sra format
1
gravatar for h.stotz
5 months ago by
h.stotz • 20
European Union
h.stotz • 20 wrote:

Good afternoon,

I downloaded an RNAseq file in .srr format using ftp in Galaxy. The file was converted into sra format. However, I cannot view the data. When I try to view the data, it gives me an option to open the file or to save the file. I do not know how I can utilise the file in Galaxy. The ftp address was: ftp://ftp.sra.ebi.ac.uk/vol1/srr/SRR313/000/SRR3134040. I hope you can help me with this.

Kind regards,

Henrik
rna-seq sra srr • 203 views
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modified 5 months ago by Jennifer Hillman Jackson ♦ 25k • written 5 months ago by h.stotz • 20

sra format is compressed archive so cannot be visualized. What are you trying to do with the data? Meaning, which tools or functions? And are you working at https://usegalaxy.org or somewhere else?

Thanks, Jen, Galaxy team

ADD REPLY • link modified 5 months ago • written 5 months ago by Jennifer Hillman Jackson ♦ 25k
0
gravatar for Jennifer Hillman Jackson
5 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Update: Question followup in this post https://biostar.usegalaxy.org/p/28412/
ADD COMMENT • link written 5 months ago by Jennifer Hillman Jackson ♦ 25k
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