Question: Unable to view data of converted srr file into sra format
1
gravatar for h.stotz
9 days ago by
h.stotz20
European Union
h.stotz20 wrote:

Good afternoon,

I downloaded an RNAseq file in .srr format using ftp in Galaxy. The file was converted into sra format. However, I cannot view the data. When I try to view the data, it gives me an option to open the file or to save the file. I do not know how I can utilise the file in Galaxy. The ftp address was: ftp://ftp.sra.ebi.ac.uk/vol1/srr/SRR313/000/SRR3134040. I hope you can help me with this.

Kind regards,

Henrik

rna-seq sra srr • 45 views
ADD COMMENTlink modified 8 days ago by Jennifer Hillman Jackson25k • written 9 days ago by h.stotz20

sra format is compressed archive so cannot be visualized. What are you trying to do with the data? Meaning, which tools or functions? And are you working at https://usegalaxy.org or somewhere else?

Thanks, Jen, Galaxy team

ADD REPLYlink modified 9 days ago • written 9 days ago by Jennifer Hillman Jackson25k
0
gravatar for Jennifer Hillman Jackson
8 days ago by
United States
Jennifer Hillman Jackson25k wrote:

Update: Question followup in this post https://biostar.usegalaxy.org/p/28412/

ADD COMMENTlink written 8 days ago by Jennifer Hillman Jackson25k
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