I've setup a local galaxy container using docker, using https://github.com/bgruening/docker-galaxy-stable.
When I used "Create DBKey and Reference Genome" (Galaxy version 0.0.2), it was killed with the following error:
An error occurred with this dataset: Fatal error: Exit code 137 () /export/galaxy-central/database/job_working_directory/000/8/tool_script.sh: line 9: 3222 Killed python '/shed_tools/toolshed.g2.bx.psu.edu/repos/devteam/data_manager_fetch_genome_dbkeys_all_fasta/b1bc53e9bb
My memory usage soared as I was using this, so I am currently assuming that it's a memory problem. However, because the memory of my PC (32G) was enough to run almost all tools except for STAR, I thought I'll have no problems using Galaxy.
I ran the tool using an existing dbkey (hg_g1k_b37), and all I changed was sorting the chromosome names by "GATK".
Am I doing something wrong here? I'll appreciate any help you guys could give me. Thanks. :)