Question: Compare 2 BAM files for covarage regions
0
gravatar for vebaev
5 months ago by
vebaev130
vebaev130 wrote:

Hi, Is there a way to compare two BAM files for a difference in coverage and extract regions (giving GFF) which differs? (I'm mapping small RNAs) i.e. extracting regions with the different expression.

gff deeptools covarage bigwig bam • 277 views
ADD COMMENTlink modified 4 months ago by Jennifer Hillman Jackson25k • written 5 months ago by vebaev130
0
gravatar for Jennifer Hillman Jackson
4 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Please see the tools in the group NGS: DeepTools. Example usage is covered in these tutorials: http://deeptools.readthedocs.io/en/latest/content/example_step_by_step.html

Thanks! Jen, Galaxy team

ADD COMMENTlink written 4 months ago by Jennifer Hillman Jackson25k
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