Question: Compare 2 BAM files for covarage regions
0
gravatar for vebaev
7 months ago by
vebaev130
vebaev130 wrote:

Hi, Is there a way to compare two BAM files for a difference in coverage and extract regions (giving GFF) which differs? (I'm mapping small RNAs) i.e. extracting regions with the different expression.

gff deeptools covarage bigwig bam • 440 views
ADD COMMENTlink modified 7 months ago by Jennifer Hillman Jackson25k • written 7 months ago by vebaev130
0
gravatar for Jennifer Hillman Jackson
7 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Please see the tools in the group NGS: DeepTools. Example usage is covered in these tutorials: http://deeptools.readthedocs.io/en/latest/content/example_step_by_step.html

Thanks! Jen, Galaxy team

ADD COMMENTlink written 7 months ago by Jennifer Hillman Jackson25k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 168 users visited in the last hour